The exact nature of the perceived threat to the aircraft in this latest case remains unclear.
The Secret Service has so far not commented on the incident, while the White House has neither confirmed nor denied it, saying only that it uses every tool available to protect the president.
While contingency plans for a variety of scenarios are developed ahead of time, experts say that the Secret Service needs to maintain flexibility and remain poised to improvise in the face of new threats as they emerge, particularly overseas.
But according to McDonald, the extraordinary measure of secretly moving President Trump from the aircraft suggests that the potential danger was deemed, likely by multiple agencies, to be serious.
"That tells me that the threat level in Turkey was relatively substantial and quite high," he said, adding that the president's staff, the Secret Service and the White House Military Office were almost certainly immediately alerted.
"Those people likely got together in a room and were presented with this intelligence," McDonald explained. "And a plan was put together to negate the threat from whatever intelligence was received."
McDonald's assessment was echoed by Marc Polymeropoulos, a 26-year veteran of the CIA who served in both Iraq and Afghanistan and oversaw clandestine missions around the world.
"The key part of this is the nature of the threat, and what was so severe that the Secret Service would put forth such a deception operation," he said.
A key question going forward, according to Polymeropoulos, is whether the government and intelligence community then had a duty to warn those on the aircraft.
"Let's say the plane was blown out of the sky, and we knew about it," he said. "We don't do that…we can't. If we know ISIS is going to attack a target in Moscow, we warn the Russians. Why do we warn the Russians? Because if there's an American citizen killed in that, we can't let that happen."
How much danger those who remained on the aircraft were in - or whether they were in danger at all - remains unclear.
Journalists on board reported that they were repeatedly instructed to keep their window blinds down, a "not uncommon" practice McDonald said shows that steps were still being taken to protect the passengers.
"A large plane flying overhead where somebody could see it, with the shades up and windows illuminated, could tell somebody that it's a particular type of aircraft," he said. "I appreciate the need for transparency, but [the passengers] are also part of the roadshow. We've got to make sure that you and everybody gets home safe."
The Secret Service, he added, is under no legal obligation to inform of potential threats or detail operations being carried out to protect the president and his entourage. That decision would need to be made by the White House or other agencies.
"The Secret Service is not in the business of public relations," he said. "We're very good at keeping secrets, as our name says. Everybody doesn't need to know everything."

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